EIR-auto-GP
===========

``EIR-auto-GP`` is a Python package
for automated genomic prediction (GP)
using deep learning models with EIR.
It is designed to streamline the process
of preparing data, training, and evaluating models on genomic data,
automating much of the process from raw input files to results analysis.

Installation
------------

First, ensure that `plink2 <https://www.cog-genomics.org/plink/2.0/>`_
is installed and available in your PATH.

Then, install EIR-auto-GP using pip:

.. code-block:: bash

    pip install eir-auto-gp


Documentation
-------------

.. toctree::
    :maxdepth: 2

    quickstart
    tutorials/tutorial_index
    understanding_eir_auto_gp/understanding_eir_auto_gp_index
    license

Workflow Overview
-----------------

.. image:: source/_static/img/eir_auto_gp.svg
    :align: center