EIR-auto-GP

EIR-auto-GP is a Python package for automated genomic prediction (GP) using deep learning models with EIR. It is designed to streamline the process of preparing data, training, and evaluating models on genomic data, automating much of the process from raw input files to results analysis.

Installation

First, ensure that plink2 is installed and available in your PATH.

Then, install EIR-auto-GP using pip:

pip install eir-auto-gp

Documentation

• Quickstart
  • A - Setup
  • B - Training
• Using EIR-auto-GP
  • 01 – Genomic Prediction for Coronary Artery Disease
  • 02 – Example of training on multiple phenotypes
  • 03 – Comparison of Feature Selection Methods
• Understanding EIR-auto-GP
  • Feature Selection Methods
• License

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